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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_49525666_49526916_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49525666 - 49526916
Intron Length:
1251

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGATAA
5'SS Class:
major
3'SS Sequence:
TCCTGAATTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TCTTCCTGAATT
Flanking Amino Acid:
MITIEEALARLKEYEAQHRQ
Intron Amino Acid Position:
193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
66.6
35.3
Major BPS
85
0.87
0.8
85.6
23
Major PPT
74.4
0.55
0.9
70.2
39.1
Minor 5ss
42.9
-0.8
2.8
47
48.4
Minor BPS
77.9
0.95
1.3
88.83
36.2

Associated Gene:

Gene:
SASH1
Ensembl Gene ID:
ENSAPLG00000007750
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033552
49276535 - 49571131
294597
ENSAPLT00000028969
49250747 - 49571131
320385
ENSAPLT00000048049
49453652 - 49572299
118648
ENSAPLT00000008063
49453652 - 49572299
118648
ENSAPLT00000047436
49387438 - 49572040
184603
ENSAPLT00000044597
49432604 - 49572299
139696