Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_49552825_49555023_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

49552825 - 49555023

Intron Length:

2199

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGTAAG

5'SS Class:

strong_major

3'SS Sequence:

CAATGCCTTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AACTGAA

U12 Branch Point Sequence:

GCTTGCTTACCA

Flanking Amino Acid:

KKYSSSLSEQESSPGVMPGS

Intron Amino Acid Position:

459

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.3

0.9

79.7

35.4

Major BPS

65.6

0.39

0.9

55.4

32.7

Major PPT

70.3

0.46

62.2

39.2

Minor 5ss

41.2

-1

2.5

50.1

46.4

Minor BPS

54.6

0.14

2.1

67.6

44.9

Associated Gene:

Gene:

SASH1

Ensembl Gene ID:

ENSAPLG00000007750

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044597

49432604 - 49572299

139696

ENSAPLT00000033552

49276535 - 49571131

294597

ENSAPLT00000028969

49250747 - 49571131

320385

ENSAPLT00000048049

49453652 - 49572299

118648

ENSAPLT00000008063

49453652 - 49572299

118648

ENSAPLT00000047436

49387438 - 49572040

184603