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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_49557564_49558256_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49557564 - 49558256
Intron Length:
693

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCTGTCCA
5'SS Class:
major
3'SS Sequence:
TCTTATTATGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTCTCTTATTA
Flanking Amino Acid:
EDLLDRINLKEHMPTFLFNG
Intron Amino Acid Position:
631

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.3
64.2
41.8
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
81.9
0.72
0.9
77.3
35.7
Minor 5ss
36
-1.6
2.6
42.9
43.9
Minor BPS
65.6
0.49
1.5
76.26
35.1

Associated Gene:

Gene:
SASH1
Ensembl Gene ID:
ENSAPLG00000007750
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044597
49432604 - 49572299
139696
ENSAPLT00000033552
49276535 - 49571131
294597
ENSAPLT00000028969
49250747 - 49571131
320385
ENSAPLT00000048049
49453652 - 49572299
118648
ENSAPLT00000008063
49453652 - 49572299
118648
ENSAPLT00000047436
49387438 - 49572040
184603