Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_49558408_49560664_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

49558408 - 49560664

Intron Length:

2257

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATA|GTACGTGAG

5'SS Class:

major

3'SS Sequence:

TCATTTCCTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTCAT

U12 Branch Point Sequence:

TCTGTTTTCACT

Flanking Amino Acid:

TAVELLQEYDSNSDQSGSQE

Intron Amino Acid Position:

681

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.1

0.4

1.1

58.9

40.3

Major BPS

94.9

1.12

0.6

93.9

14.7

Major PPT

77.7

0.62

0.8

70.4

36.1

Minor 5ss

32.8

-2

3.4

40.9

Minor BPS

55.2

0.24

1.9

74.22

43.6

Associated Gene:

Gene:

SASH1

Ensembl Gene ID:

ENSAPLG00000007750

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044597

49432604 - 49572299

139696

ENSAPLT00000033552

49276535 - 49571131

294597

ENSAPLT00000028969

49250747 - 49571131

320385

ENSAPLT00000048049

49453652 - 49572299

118648

ENSAPLT00000008063

49453652 - 49572299

118648

ENSAPLT00000047436

49387438 - 49572040

184603