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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_49568284_49569894_F

Intron Information:

Intron Rank:
18
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
49568284 - 49569894
Intron Length:
1611

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TGGGAACGTTCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
TGGCTGGGAACG
Flanking Amino Acid:
DLTEEPYSDKHGRCGIPEAL
Intron Amino Acid Position:
1098

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1
72.4
39.5
Major BPS
77.7
0.69
1
81
30.2
Major PPT
57.3
0.16
1.1
51.6
46.9
Minor 5ss
30.7
-2.2
3.4
40.4
45.8
Minor BPS
36
-1.2
2.4
41.75
42.9

Associated Gene:

Gene:
SASH1
Ensembl Gene ID:
ENSAPLG00000007750
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033552
49276535 - 49571131
294597
ENSAPLT00000028969
49250747 - 49571131
320385
ENSAPLT00000048049
49453652 - 49572299
118648
ENSAPLT00000008063
49453652 - 49572299
118648
ENSAPLT00000047436
49387438 - 49572040
184603
ENSAPLT00000044597
49432604 - 49572299
139696