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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_49570027_49570870_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49570027 - 49570870
Intron Length:
844

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCTGCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TTTTCCTTCTCT
Flanking Amino Acid:
KQLRKQHRMAIPSGGLTEIC
Intron Amino Acid Position:
1142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
85
32.3
Major BPS
84.4
0.85
1
84
34.5
Major PPT
75
0.56
0.9
68.3
37.4
Minor 5ss
43.9
-0.7
2.9
66.1
38.6
Minor BPS
50.3
0.09
3.6
91.83
37.8

Associated Gene:

Gene:
SASH1
Ensembl Gene ID:
ENSAPLG00000007750
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008063
49453652 - 49572299
118648
ENSAPLT00000047436
49387438 - 49572040
184603
ENSAPLT00000044597
49432604 - 49572299
139696
ENSAPLT00000033552
49276535 - 49571131
294597
ENSAPLT00000028969
49250747 - 49571131
320385
ENSAPLT00000048049
49453652 - 49572299
118648