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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_49883397_49885308_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49883397 - 49885308
Intron Length:
1912

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGGGCC
5'SS Class:
major
3'SS Sequence:
CTGTCTTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTATCAGTAATG
Flanking Amino Acid:
IVQRNAFKLNNNNNLDACCA
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
71.2
34.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
80.8
0.69
0.8
76
32.6
Minor 5ss
32.9
-1.9
3.6
46.8
42.1
Minor BPS
50.1
-0.1
2.3
65.41
42.5

Associated Gene:

Gene:
TAB2
Ensembl Gene ID:
ENSAPLG00000008173
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035590
49880538 - 49897595
17058