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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_49885129_49885308_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49885129 - 49885308
Intron Length:
180

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAGCTTC
5'SS Class:
major
3'SS Sequence:
CTGTCTTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTATCAGTAATG
Flanking Amino Acid:
ASDGVAVLKLNNNNLDACCA
Intron Amino Acid Position:
18

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1
68.7
37.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
80.8
0.69
0.8
76
32.6
Minor 5ss
51
0.04
2.7
69.6
36
Minor BPS
50.1
-0.1
2.3
65.41
42.5

Associated Gene:

Gene:
TAB2
Ensembl Gene ID:
ENSAPLG00000008173
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042082
49884880 - 49897595
12716