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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_49886822_49894362_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
49886822 - 49894362
Intron Length:
7541

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATATTC
5'SS Class:
strong_major
3'SS Sequence:
TTATGTATTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
ACTTTATGTATT
Flanking Amino Acid:
MGSDDAAYTQALLVHQKARM
Intron Amino Acid Position:
539

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
77.9
31
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
80.1
0.68
0.9
74.2
40
Minor 5ss
42.6
-0.8
3.1
59.6
45
Minor BPS
44.9
-0.3
1.9
63.65
41.1

Associated Gene:

Gene:
TAB2
Ensembl Gene ID:
ENSAPLG00000008173
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035590
49880538 - 49897595
17058
ENSAPLT00000022294
49880538 - 49897595
17058
ENSAPLT00000008484
49880538 - 49897595
17058
ENSAPLT00000042082
49884880 - 49897595
12716