About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_49916526_49917827_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
49916526 - 49917827
Intron Length:
1302

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGAA
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAGAT
U12 Branch Point Sequence:
ATTCCTGTGACT
Flanking Amino Acid:
RLLMYSFVSNRFMPPDDPLG
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.3
31.1
Major BPS
74.1
0.6
1
69
38.9
Major PPT
89.4
0.89
0.6
87.7
22.3
Minor 5ss
28.5
-2.5
3.5
37.1
47.5
Minor BPS
55.8
0.26
2
78.73
37.5

Associated Gene:

Gene:
ZC3H12D
Ensembl Gene ID:
ENSAPLG00000008379
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008703
49914971 - 49924124
9154