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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_49919199_49923016_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
49919199 - 49923016
Intron Length:
3818

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCCGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTTAAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTCTTTTTAAG
Flanking Amino Acid:
IVIDGSNVAMSHGNKEVFSC
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
72.7
44.5
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
85.2
0.79
0.9
90.8
21.8
Minor 5ss
39.6
-1.2
3.1
56.8
47.4
Minor BPS
49.4
-0.1
1.8
61.38
40.3

Associated Gene:

Gene:
ZC3H12D
Ensembl Gene ID:
ENSAPLG00000008379
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008703
49914971 - 49924124
9154