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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_49943093_49944004_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49943093 - 49944004
Intron Length:
912

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAACATC
5'SS Class:
major
3'SS Sequence:
TTGTATCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
ATTTTTGTATCC
Flanking Amino Acid:
AKTRAILLEMVGDLPDAEVK
Intron Amino Acid Position:
227

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1
67.3
37.9
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
75.6
0.58
0.9
69.4
36.6
Minor 5ss
38
-1.4
3.1
48.3
42.3
Minor BPS
48.8
-0.1
2.2
67.58
38.6

Associated Gene:

Gene:
PPIL4
Ensembl Gene ID:
ENSAPLG00000008437
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008822
49932889 - 49948739
15851