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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_49944456_49945199_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
49944456 - 49945199
Intron Length:
744

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGACTG
5'SS Class:
major
3'SS Sequence:
TGTTCCCTATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TGTTCCCTATTA
Flanking Amino Acid:
DKDFIPYQDIRINHTVILDD
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
64.2
41.7
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
72.5
0.51
0.9
71.7
34.2
Minor 5ss
36.2
-1.6
3.1
46.9
48.4
Minor BPS
57.4
0.23
1.9
73.03
38.9

Associated Gene:

Gene:
PPIL4
Ensembl Gene ID:
ENSAPLG00000008437
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008822
49932889 - 49948739
15851