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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_49945343_49946373_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49945343 - 49946373
Intron Length:
1031

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TTTCCATTCACT
Flanking Amino Acid:
NNGSDQHGSQFLITTGENLD
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1.2
81.8
38.5
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
95.2
1.02
0.5
91.6
19.5
Minor 5ss
34.8
-1.7
2.7
42.5
44.3
Minor BPS
62.8
0.49
2.1
86.99
38.2

Associated Gene:

Gene:
PPIL4
Ensembl Gene ID:
ENSAPLG00000008437
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008822
49932889 - 49948739
15851