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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_49948257_49948345_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49948257 - 49948345
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTGTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACATAT
U12 Branch Point Sequence:
AATATCTTACAT
Flanking Amino Acid:
YNYCLIYNVQRDFIIQTGDP
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.7
90.4
20.6
Major BPS
66.4
0.41
1
61.3
37
Major PPT
71.5
0.48
1.1
67.8
42.5
Minor 5ss
33.2
-1.9
3.4
48.7
47.5
Minor BPS
51.8
0.13
1.7
69.48
40.9

Associated Gene:

Gene:
PPIL4
Ensembl Gene ID:
ENSAPLG00000008437
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008822
49932889 - 49948739
15851