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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_49948414_49948669_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
49948414 - 49948669
Intron Length:
256

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTACGGGGC
5'SS Class:
major
3'SS Sequence:
TGTTTTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGGTAAC
U12 Branch Point Sequence:
CCTCCGGTAACC
Flanking Amino Acid:
IDLYTEERPRACLNFLKLCK
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.1
56.6
42.5
Major BPS
48.8
-0
1.3
50.7
41.5
Major PPT
89.8
0.89
0.7
84.9
29.9
Minor 5ss
29
-2.4
3.7
40.8
45.9
Minor BPS
44.6
-0.4
2.6
59.23
46

Associated Gene:

Gene:
PPIL4
Ensembl Gene ID:
ENSAPLG00000008437
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008822
49932889 - 49948739
15851