About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_49959259_49959444_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49959259 - 49959444
Intron Length:
186

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTCAG
5'SS Class:
major
3'SS Sequence:
GTCTGTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTCAT
U12 Branch Point Sequence:
GCACACTCATTC
Flanking Amino Acid:
KSNGEFHKGQVVFNITYANG
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.2
62.7
43.2
Major BPS
74.8
0.62
0.9
75.3
29.7
Major PPT
80.4
0.68
0.9
76.9
37.4
Minor 5ss
36
-1.6
2.6
41.2
45.2
Minor BPS
40.7
-0.7
1.8
43.02
37.6

Associated Gene:

Gene:
GINM1
Ensembl Gene ID:
ENSAPLG00000008777
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009130
49959199 - 49968365
9167