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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_49962283_49964273_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49962283 - 49964273
Intron Length:
1991

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATAAA
5'SS Class:
strong_major
3'SS Sequence:
GCCTCTCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TAAATTTAAACA
Flanking Amino Acid:
EEVTEIDGRQVQQEEVTEID
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.8
85.6
24.6
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
78.8
0.65
0.8
72.4
32.3
Minor 5ss
34.4
-1.8
2.8
41.8
44.8
Minor BPS
51.4
0.04
1.6
61.52
38.5

Associated Gene:

Gene:
GINM1
Ensembl Gene ID:
ENSAPLG00000008777
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009130
49959199 - 49968365
9167