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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_49965309_49966712_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49965309 - 49966712
Intron Length:
1404

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGTGC
5'SS Class:
major
3'SS Sequence:
TGCTTGGTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
CTTTTTCTATCT
Flanking Amino Acid:
LRIEPPSSYKVMCQWVEDLR
Intron Amino Acid Position:
193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
64.8
42.3
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
71
0.47
1
65.1
41.2
Minor 5ss
35.7
-1.6
3.5
49.7
46.9
Minor BPS
51.9
0.14
1.9
75.57
41.7

Associated Gene:

Gene:
GINM1
Ensembl Gene ID:
ENSAPLG00000008777
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009130
49959199 - 49968365
9167