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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_49966877_49968256_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
49966877 - 49968256
Intron Length:
1380

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TCTTACCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTAAT
U12 Branch Point Sequence:
GTAATCTTACCT
Flanking Amino Acid:
LKVIFPSCENKGILLLDQDS
Intron Amino Acid Position:
247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
84.2
26.3
Major BPS
76.7
0.66
1.2
77.9
34.9
Major PPT
84.6
0.78
0.8
81.3
30.3
Minor 5ss
37.7
-1.4
2.7
46.1
36.1
Minor BPS
59
0.36
1.7
74.13
42.3

Associated Gene:

Gene:
GINM1
Ensembl Gene ID:
ENSAPLG00000008777
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009130
49959199 - 49968365
9167