Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_49971748_49975709_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

49971748 - 49975709

Intron Length:

3962

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGTGAA

5'SS Class:

strong_major

3'SS Sequence:

CTGTACCTCACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTCCAC

U12 Branch Point Sequence:

TGTACCTCACAG

Flanking Amino Acid:

YSGADITNVCRDASLMAMRR

Intron Amino Acid Position:

430

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.2

0.9

0.8

79.4

28.9

Major BPS

52.2

0.06

1.4

64.2

Major PPT

72.1

0.5

0.9

64.9

36.1

Minor 5ss

38.1

-1.3

3.1

48.5

47.7

Minor BPS

46.2

-0.4

54.94

45.3

Associated Gene:

Gene:

KATNA1

Ensembl Gene ID:

ENSAPLG00000008891

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009282

49971549 - 49986635

15087