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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_49975837_49976107_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
49975837 - 49976107
Intron Length:
271

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAAAGA
5'SS Class:
major
3'SS Sequence:
GTTCTTTAATTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TGTTCTTTAATT
Flanking Amino Acid:
EKRIYIPLPSAKGREELLRI
Intron Amino Acid Position:
388

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
66.7
38.5
Major BPS
78.6
0.71
1
78.6
31
Major PPT
70.5
0.46
1
71.3
38.6
Minor 5ss
38.3
-1.3
2.9
49.3
46.5
Minor BPS
84.7
1.17
0.9
92.55
29.6

Associated Gene:

Gene:
KATNA1
Ensembl Gene ID:
ENSAPLG00000008891
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009282
49971549 - 49986635
15087