Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_49976243_49977762_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

49976243 - 49977762

Intron Length:

1520

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAATATC

5'SS Class:

strong_major

3'SS Sequence:

TTCTCCAATGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTTAC

U12 Branch Point Sequence:

TTTTCTCCAATG

Flanking Amino Acid:

VKAELLVQMDGVGGATENDD

Intron Amino Acid Position:

343

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.2

0.74

0.9

80.3

32.2

Major BPS

77.8

0.69

0.9

69.4

37.3

Major PPT

76.1

0.59

0.9

70.8

33.6

Minor 5ss

39.8

-1.1

2.9

51.1

Minor BPS

54.6

0.01

1.9

68.25

39.7

Associated Gene:

Gene:

KATNA1

Ensembl Gene ID:

ENSAPLG00000008891

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009282

49971549 - 49986635

15087