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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_49979490_49980721_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
49979490 - 49980721
Intron Length:
1232

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTTGTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTCAA
U12 Branch Point Sequence:
TGTCAAACAACT
Flanking Amino Acid:
DIISQNPNIRWDDIADLVEA
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.8
80.5
34.9
Major BPS
63.3
0.33
1.2
67
39.8
Major PPT
83.6
0.75
0.9
84.4
30.5
Minor 5ss
44
-0.7
2.8
55.1
43.4
Minor BPS
43
-0.4
2.1
66.84
42.4

Associated Gene:

Gene:
KATNA1
Ensembl Gene ID:
ENSAPLG00000008891
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009282
49971549 - 49986635
15087