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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_49980844_49982373_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49980844 - 49982373
Intron Length:
1530

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
CCCTTCTATGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
ACTGCTATATCC
Flanking Amino Acid:
EQQNKGKEEKNKSASEISES
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.7
1.1
0.7
87.9
29.3
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
73.3
0.52
0.8
69.1
30.3
Minor 5ss
43.8
-0.7
2.8
57.8
46.8
Minor BPS
46.3
-0.3
1.9
57.02
42

Associated Gene:

Gene:
KATNA1
Ensembl Gene ID:
ENSAPLG00000008891
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009282
49971549 - 49986635
15087