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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_49982558_49985613_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
49982558 - 49985613
Intron Length:
3056

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
TACAACTAATTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TATATTACAACT
Flanking Amino Acid:
VWSLPVPAERRPSPGPRKRQ
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
75.2
35.1
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
54.7
0.11
1
52.8
41.1
Minor 5ss
29.8
-2.3
3.3
38.8
46.3
Minor BPS
48.7
-0
1.8
71
39.6

Associated Gene:

Gene:
KATNA1
Ensembl Gene ID:
ENSAPLG00000008891
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009282
49971549 - 49986635
15087