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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_50009735_50012234_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
50009735 - 50012234
Intron Length:
2500

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAAACTT
5'SS Class:
major
3'SS Sequence:
ATTTTTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATATTTAATT
Flanking Amino Acid:
QDLQAAGFDEDMVIQALRQT
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
0.9
73.9
36.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
87.1
0.83
0.7
86.1
27.7
Minor 5ss
31.8
-2.1
3.4
47.4
48
Minor BPS
72.9
0.8
1.4
85.75
34.2

Associated Gene:

Gene:
LATS1
Ensembl Gene ID:
ENSAPLG00000009385
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009777
49997083 - 50012744
15662