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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_50021451_50023230_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
50021451 - 50023230
Intron Length:
1780

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGCCAA
5'SS Class:
strong_major
3'SS Sequence:
ATCTCTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
GCTTTCTCAATC
Flanking Amino Acid:
ADQKDAVRTIDNADSSTLHA
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
66.8
40.4
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
83
0.74
0.8
77.3
30.7
Minor 5ss
43.3
-0.7
2.9
55.6
48.6
Minor BPS
61.4
0.34
1.5
66.75
39.3

Associated Gene:

Gene:
NUP43
Ensembl Gene ID:
ENSAPLG00000028569
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043930
50016277 - 50025019
8743