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Intron Name: Anas_platyrhynchos_platyrhynchos_3_50028658_50039603_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

50028658 - 50039603

Intron Length:

10946

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCA|GTGAGTCGG

5'SS Class:

major

3'SS Sequence:

GTTTTATTTATAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTTAT

U12 Branch Point Sequence:

ATGCCTTCAATT

Flanking Amino Acid:

SHAELIHNLRKNGIIKSDKV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.3

0.43

1.1

53.8

Major BPS

87.7

0.94

0.8

77.7

36.7

Major PPT

82.6

0.73

0.8

77.3

Minor 5ss

30.4

-2.2

2.9

37.9

40.7

Minor BPS

58.4

0.34

1.5

72.01

39.3

Associated Gene:

Gene:

PCMT1

Ensembl Gene ID:

ENSAPLG00000009762

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030899

50028393 - 50040366

11974

ENSAPLT00000010192

50028393 - 50060962

32570