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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_50039709_50040298_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
50039709 - 50040298
Intron Length:
590

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
ATTATTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTTTATTATTT
Flanking Amino Acid:
NPYMDSPQSIGNFKKNLLRY
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
30
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
82.3
0.73
0.8
77.8
35.8
Minor 5ss
30.7
-2.2
3.3
39.5
45.9
Minor BPS
58
0.33
1.8
79.06
37.3

Associated Gene:

Gene:
PCMT1
Ensembl Gene ID:
ENSAPLG00000009762
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030899
50028393 - 50040366
11974