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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_50039709_50040803_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
50039709 - 50040803
Intron Length:
1095

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAA
U12 Branch Point Sequence:
AATTCTTCCACT
Flanking Amino Acid:
NPYMDSPQSIGFQATISAPH
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
30
Major BPS
79
0.72
1
80.3
31.7
Major PPT
86.2
0.81
0.8
80.6
31.4
Minor 5ss
30.7
-2.2
3.3
39.5
45.9
Minor BPS
54.5
0.22
2
75.85
40.8

Associated Gene:

Gene:
PCMT1
Ensembl Gene ID:
ENSAPLG00000009762
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010192
50028393 - 50060962
32570