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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_50043003_50046396_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
50043003 - 50046396
Intron Length:
3394

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTATTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
AATTATTCAACT
Flanking Amino Acid:
GILTACFSRMVGPKGQVVGI
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
78.6
30
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
86.4
0.82
0.8
78.6
39.1
Minor 5ss
29.8
-2.3
3
37.3
41.2
Minor BPS
59.8
0.39
1.7
77.28
38.6

Associated Gene:

Gene:
PCMT1
Ensembl Gene ID:
ENSAPLG00000009762
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010192
50028393 - 50060962
32570