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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_50046518_50051732_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
50046518 - 50051732
Intron Length:
5215

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGCATC
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATCTTTTTAAAA
Flanking Amino Acid:
LLSSGRVKLIVGDGRMGYAE
Intron Amino Acid Position:
210

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
0.9
74
36.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
100
1.12
0.4
100
0
Minor 5ss
38.6
-1.3
3
48.9
41.6
Minor BPS
65.6
0.49
1.3
70.15
36.2

Associated Gene:

Gene:
PCMT1
Ensembl Gene ID:
ENSAPLG00000009762
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010192
50028393 - 50060962
32570