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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_50051819_50053272_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
50051819 - 50053272
Intron Length:
1454

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGCCAT
5'SS Class:
major
3'SS Sequence:
TGTTGTCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
TACACTCTAACT
Flanking Amino Acid:
GAAAPVVPQALIDQLKPGGR
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.1
62.9
43.3
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
82.6
0.73
0.9
73.5
41.8
Minor 5ss
41.7
-0.9
3.2
62.2
43.2
Minor BPS
58.4
0.34
1.7
74.68
41.8

Associated Gene:

Gene:
PCMT1
Ensembl Gene ID:
ENSAPLG00000009762
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010192
50028393 - 50060962
32570