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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_50053490_50059962_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
50053490 - 50059962
Intron Length:
6473

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAAAGGG
5'SS Class:
major
3'SS Sequence:
TTTCTTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCATAAC
U12 Branch Point Sequence:
AGAATCATAACT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
59.2
40
Major BPS
65.3
0.38
1.1
66.2
36.5
Major PPT
92.4
0.95
0.6
88.6
20.8
Minor 5ss
23.7
-3
3.1
29.4
43.3
Minor BPS
54.5
0.22
1.7
70.06
39.9

Associated Gene:

Gene:
PCMT1
Ensembl Gene ID:
ENSAPLG00000009762
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010192
50028393 - 50060962
32570