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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_50076354_50078095_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
50076354 - 50078095
Intron Length:
1742

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTCGA
5'SS Class:
major
3'SS Sequence:
TTTCTTCTATCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTTAT
U12 Branch Point Sequence:
TTTTCTTCTATC
Flanking Amino Acid:
LQGDSAVEMKVPQPGTLKLS
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1.1
61.9
44.3
Major BPS
71.5
0.54
1.1
63.3
42.8
Major PPT
85.6
0.8
0.8
86
26.8
Minor 5ss
32.6
-2
3
42.3
44.2
Minor BPS
58.4
0.25
1.8
74.54
36.5

Associated Gene:

Gene:
LRP11
Ensembl Gene ID:
ENSAPLG00000009937
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010342
50067404 - 50083270
15867