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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_50126597_50162724_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
50126597 - 50162724
Intron Length:
36128

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGCGGGGC
5'SS Class:
major
3'SS Sequence:
TCTCCCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAC
U12 Branch Point Sequence:
TCTCTGTGAACT
Flanking Amino Acid:
EQLGQLYGCEEEEMPDVEID
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
59.7
39.4
Major BPS
68
0.45
0.9
67.6
25.3
Major PPT
86.6
0.82
0.7
84.2
23.7
Minor 5ss
23.1
-3.1
3.4
32.1
42.7
Minor BPS
49.7
0.06
2.2
73.74
43.1

Associated Gene:

Gene:
PPP1R14C
Ensembl Gene ID:
ENSAPLG00000009955
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010356
50126327 - 50173843
47517