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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_50162809_50164177_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
50162809 - 50164177
Intron Length:
1369

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATATTA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
TGTATTGAAACT
Flanking Amino Acid:
NEEERALKLQETLVDCYKPT
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
79.7
29.1
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
81.3
0.7
0.8
73.6
37
Minor 5ss
41.6
-0.9
3.1
56.5
47.5
Minor BPS
45.5
-0.2
2.2
68.35
42.9

Associated Gene:

Gene:
PPP1R14C
Ensembl Gene ID:
ENSAPLG00000009955
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010356
50126327 - 50173843
47517