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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_50164211_50173768_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
50164211 - 50173768
Intron Length:
9558

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TCTTTTCTAATC
Flanking Amino Acid:
TLVDCYKPTEEFIKELLTRI
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
74.1
36.4
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
89.6
0.89
0.6
84.8
30
Minor 5ss
32.2
-2
3
40.7
45.1
Minor BPS
59.8
0.29
1.6
69.85
36.3

Associated Gene:

Gene:
PPP1R14C
Ensembl Gene ID:
ENSAPLG00000009955
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010356
50126327 - 50173843
47517