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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_50200480_50206814_F

Intron Information:

Intron Rank:
131352
Intron Class:
major
Intron Phase:
Intron Coordinates:
50200480 - 50206814
Intron Length:
6335

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTAAT
U12 Branch Point Sequence:
GGTTCTGTAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
25.6
Major BPS
72.1
0.55
1.2
73.3
39.1
Major PPT
85.7
0.8
0.9
80.6
37
Minor 5ss
35.3
-1.7
3.2
50.4
46
Minor BPS
52.2
-0
2.1
60.45
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020560
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035741
50198788 - 50214458
15671