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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_50250265_50271208_F

Intron Information:

Intron Rank:
123989
Intron Class:
major
Intron Phase:
Intron Coordinates:
50250265 - 50271208
Intron Length:
20944

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCAG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
TAAATTGTAAGA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
64.9
42.8
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
86
0.81
0.6
84.9
22.7
Minor 5ss
31.8
-2.1
3
37.6
47.1
Minor BPS
43.2
-0.5
2.1
53.18
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016824
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034859
50250152 - 50273136
22985