Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_50290031_50300719_F

Intron Information:

Intron Rank:

145947

Intron Class:

major

Intron Phase:

Intron Coordinates:

50290031 - 50300719

Intron Length:

10689

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGTTAC

5'SS Class:

strong_major

3'SS Sequence:

GTTTTTCTTGAAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTAAT

U12 Branch Point Sequence:

TTCTTATTAATC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.5

0.91

0.8

80.1

28.4

Major BPS

91.8

1.04

0.7

90.2

19.3

Major PPT

78.4

0.64

79.6

32.8

Minor 5ss

46.6

-0.3

2.5

60.6

44.5

Minor BPS

66.9

0.51

1.5

74.76

36.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028631

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046897

50289110 - 50301397

12288