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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_50397881_50416697_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
50397881 - 50416697
Intron Length:
18817

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAGTC
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TCATTCTCATTT
Flanking Amino Acid:
YVQDLKSIVEDYLDCITDQS
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
73.3
36.4
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
83
0.74
0.7
78.2
29.8
Minor 5ss
33.6
-1.9
3.7
49.4
47.1
Minor BPS
50.2
0.09
1.8
68.32
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029816
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032241
50309682 - 50430662
120981