About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_50416799_50422684_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
50416799 - 50422684
Intron Length:
5886

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTGTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAATAAT
U12 Branch Point Sequence:
TTGTCTTGGATT
Flanking Amino Acid:
GNIRDIYHFNSELLQDLENC
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.3
33.9
Major BPS
67.7
0.44
1.1
67.9
34.4
Major PPT
84.9
0.78
0.8
84.5
30.4
Minor 5ss
38.9
-1.2
2.9
48.7
47.5
Minor BPS
63.8
0.52
1.4
79.16
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029816
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032241
50309682 - 50430662
120981