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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_50433763_50433850_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
50433763 - 50433850
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTCAG
5'SS Class:
major
3'SS Sequence:
CTCTTTATTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
CTCTCTTTATTA
Flanking Amino Acid:
MFAYKAHILCGNLMLVEVI
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
63.2
42.6
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
85.4
0.8
0.8
80
30.5
Minor 5ss
39.8
-1.1
2.8
46.2
43.5
Minor BPS
59.8
0.3
1.6
66.17
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010066
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010514
50433736 - 50448948
15213