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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_50433947_50434062_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
50433947 - 50434062
Intron Length:
116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGACAG
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTTATCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTTATCA
Flanking Amino Acid:
KNPKMQHTVQAKSQQDKRLW
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
64.3
41.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85
0.79
0.9
85.9
33
Minor 5ss
37.4
-1.4
3
46.9
48.4
Minor BPS
66.1
0.5
1.5
75.42
36.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010066
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010514
50433736 - 50448948
15213