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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_50437686_50438987_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
50437686 - 50438987
Intron Length:
1302

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAATGAA
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAACAT
U12 Branch Point Sequence:
AGTGCTTAAACA
Flanking Amino Acid:
TTQQRVRRKSEPSSRVHKVL
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
76.1
27.5
Major BPS
63.2
0.33
1.1
69.6
35.7
Major PPT
89.8
0.89
0.7
88.4
28.7
Minor 5ss
25.9
-2.8
3
30.8
43.1
Minor BPS
55.8
0.18
1.8
66
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010066
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010514
50433736 - 50448948
15213