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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_50439515_50440377_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
50439515 - 50440377
Intron Length:
863

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACAT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
AGTACTTTTATT
Flanking Amino Acid:
SNDISPDMQKRIGIEGALLS
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
80.7
33.7
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
91.8
0.94
0.7
84.8
35.4
Minor 5ss
33.6
-1.9
3.2
47.4
48
Minor BPS
56.1
0.27
1.6
71.61
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010066
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010514
50433736 - 50448948
15213