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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_50458363_50459248_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
50458363 - 50459248
Intron Length:
886

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGCGTCAT
5'SS Class:
strong_major
3'SS Sequence:
GTCTGTCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTCAA
U12 Branch Point Sequence:
GGCAGCTCAATG
Flanking Amino Acid:
CAVLELLEDLDGKTVLLVGA
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
74.2
38
Major BPS
61.8
0.29
1.1
63.4
35.6
Major PPT
76.5
0.6
0.9
69.6
36.8
Minor 5ss
29.4
-2.4
3.1
40.5
45.6
Minor BPS
42.7
-0.6
2
41.86
42.9

Associated Gene:

Gene:
MTHFD1L
Ensembl Gene ID:
ENSAPLG00000010485
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047363
50454266 - 50592559
138294
ENSAPLT00000033739
50454266 - 50592559
138294
ENSAPLT00000010984
50453962 - 50592559
138598
ENSAPLT00000047959
50453962 - 50592559
138598