Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_50459374_50466978_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

50459374 - 50466978

Intron Length:

7605

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGAGCT

5'SS Class:

strong_major

3'SS Sequence:

GGGCTGTTCATAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGTT

U12 Branch Point Sequence:

GGGCTGTTCATA

Flanking Amino Acid:

QWKSRELQNKLHHADVVVVG

Intron Amino Acid Position:

156

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.3

0.88

0.8

77.7

30.1

Major BPS

38.1

-0.7

4.3

71.4

45.1

Major PPT

60.2

0.23

52.9

41.6

Minor 5ss

27.6

-2.6

3.3

39.2

46.2

Minor BPS

39.7

-0.8

2.2

45.35

Associated Gene:

Gene:

MTHFD1L

Ensembl Gene ID:

ENSAPLG00000010485

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033739

50454266 - 50592559

138294

ENSAPLT00000010984

50453962 - 50592559

138598

ENSAPLT00000047959

50453962 - 50592559

138598

ENSAPLT00000047363

50454266 - 50592559

138294